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| Registros recuperados : 42 | |
| 1. |  | COSTA, K. A. de P.; OLIVEIRA JÚNIOR, J. P. de; OLIVEIRA, I. P. de; HEINEMANN, A. B.; FAQUIN, V.; RODRIGUES, C. Adubação fosfatada e potássica no crescimento e nutrição da Crotalaria juncea L. Ciência e Agrotecnologia, v. 30, n. 5, p. 827-831, set./out. 2006.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 2. | | COSTA, K. A. de P.; OLIVEIRA, I. P. de; FAQUIN, V.; FIGUEIREDO, F. C.; RODRIGUES, C. R.; NASCIMENTO, P. P. Adubação nitrogenada e potássica na concentração de nutrientes do capim-xaraés. Ciência Animal Brasileira, Goiânia, v. 9, n. 1, p. 86-92, jan./mar. 2008.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 4. | | OTTO, P. I.; GOBO, D. O. R.; OLIVEIRA, D.; BÖCK, M. J.; GARCIA, A. O.; SANTOS, M. G. dos; OTTO, T. M.; ROCHA, R. de F. B.; SILVA, M. V. G. B.; DALTRO, D. dos S.; NEGRI, R.; KLUSKA, S.; COSTA, K. A. Aplicações da genômica na produção animal. In: SIMPÓSIO DE INVESTIGAÇÃO EM PRODUÇÃO ANIMAL, 1., 2023, Santa Maria, RS. [Trabalhos apresentados]. Canoas, RS: Mérida Publishers, 2023. p. 95-112.| Biblioteca(s): Embrapa Gado de Leite. |
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| 5. | | BENITES, V. de M.; TANNUS, V. R.; MENEZES, J. F. S.; SIMON, G. A.; COSTA, K. A. de P.; MARTINS, E. de S. Avaliação da capacidade de extração de nutrientes por plantas de cobertura, adubadas com pó de rocha obtido a partir da brecha alcalina de Santo Antônio da Barra-GO. Centro Tecnológico COMIGO Resultados 2009, Goiânia, p. 56-57, 2009.| Biblioteca(s): Embrapa Solos. |
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| 6. | | CASTRO, D. da S.; BENITES, V. de M.; SILVA, G. P.; SIMON, G. A.; COSTA, K. A. de P.; ASSIS, R. L. de; BRAZ, A. J. B. P.; BENTO, J. C. Avaliação da fertilidade do solo sob diferentes usos no Sudoeste Goiano. In: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 32., 2009, Fortaleza. O solo e a produção de bioenergia: perspectivas e desafios. [Viçosa, MG]: SBCS; Fortaleza: UFC, 2009. 1 CD-ROM.| Biblioteca(s): Embrapa Solos. |
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| 7. | | MAGALHÃES, R. T. de; COELHO, O. C.; BENKO, J. S.; COSTA, K. A. de P.; OLIVEIRA, I. P. de. Avaliação das características físicas do solo submetidos ao cultivo de pastagens nas áreas do Campus II da U. C. G. In: INTERNATIONAL SYMPOSIUM SOIL FUNCTIONING UNDER PASTURES IN INTERTROPICAL AREAS, 2000, Brasilia, DF. Extended abstracts. Planaltina, DF: Embrapa Cerrados, 2000. 4 p. 1 CD-ROM.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 9. | | SMIDERLE, O. J.; SOUZA, A. G.; SCHWENGBER, D. R.; MARQUES, C. S.; COSTA, K. A. Biometria de frutos e de sementes e emergência de plântulas de Abiu. In: CONGRESSO BRASILEIRO DE SEMENTES, 20., 2017, Foz do Iguaçu. Informativo Abrates, v. 27, n. 2, p. 237, 2017.| Biblioteca(s): Embrapa Roraima. |
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| 10. | | DIAS, M. B. de C.; COSTA, K. A. de P.; SEVERIANO, E. da C.; BILEGO, U. O.; FURTINI NETO, A. E.; ALMEIDA, D. P.; BRAND, S. P.; VILELA, L. Brachiaria and Panicum maximum in an integrated crop?livestock system and a second-crop maize system in succession with soybean. Journal of Agricultural Science, v. 158, n. 3, 2020. p. 206-217| Biblioteca(s): Embrapa Cerrados. |
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| 11. | | SMIDERLE, O. J.; COSTA, K. A.; LIMA, H. E. de; MATTOS, B. R. S. Caracterização de sementes e emergência de plântulas de cupuaçu. In: CONGRESSO BRASILEIRO DE FRUTICULTURA, 25., 2017; REUNIÃO ANUAL DA SOCIEDADE INTERAMERICANA DE HORTICULTURA TROPICAL, 62., 2017. Resumos... Porto Seguro, BA: SIHT, 2017.| Biblioteca(s): Embrapa Roraima. |
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| 13. | | SILVA, J. F. G.; SEVERIANO, E. da C.; COSTA, K. A. de P.; BENITES, V. de M.; GUIMARÃES JÚNNYOR, W. da S.; BENTO, J. C. Chemical and physical-hydric characterisation of a red latosol after five years of management during the summer between-crop season. Revista Brasileira de Ciência do Solo, Viçosa, MG, v. 38, n. 5, p. 1576-1586, set./out. 2014.| Biblioteca(s): Embrapa Solos. |
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| 14. | | COSTA, K. A. de P.; FRANÇA, A. F. de S.; OLIVEIRA, I. P. de; MONTEIRO, F. A.; BARRIGOSSI, J. A. F. Composição química-bromatológica do capim-Tanzânia em função de doses de nitrogênio, potássio e enxofre. Ciência Animal Brasileira, v. 5, n. 2, p. 83-91, abr./jun. 2004.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 17. | | SAMPAIO, F. de M. T.; COSTA, K. A. de P.; PASSOS, A. M. A. dos; PINTO, S. I. do C.; ARAUJO, J. L.; CARVALHO, G. S.; BRITO, A. H. Doses de nitrogênio no crescimento e nutrição do milho cultivado em solo corrigido em diferentes profundidades. Separata de: Global Science and Technology, Rio Verde, v. 04, n. 02, p.27-37, mai/ago. 2011.| Biblioteca(s): Embrapa Rondônia. |
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| 18. | | COSTA, K. A. de P.; FAQUIN, V.; OLIVEIRA, I. P. de; RODRIGUES, C.; SEVERIANO, E. da C. Doses e fontes de nitrogênio em pastagem de capim-marandu. I. alterações nas características químicas do solo. Revista Brasileira de Ciência do Solo, Viçosa, MG, v. 32, n. 4, p. 1591-1599, jul./ago. 2008.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 19. | | COSTA, K. A. de P.; FAQUIN, V.; OLIVEIRA, I. P. de; ARAÚJO, J. L.; RODRIGUES, R. B. Doses e fontes de nitrogênio em pastagem de capim-marandu. II. nutrição nitrogenada da planta. Revista Brasileira de Ciência do Solo, Viçosa, MG, v. 32, n. 4, p. 1601-1607, jul./ago. 2008.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 20. | | COSTA, K. A. de P.; FAQUIN, V.; OLIVEIRA, I. P. de; SEVERIANO, E. da C.; OLIVEIRA, M. A. de. Doses e fontes de nitrogênio na nutrição mineral do capim-marandu. Ciência Animal Brasileira, Goiânia, v. 10, n. 1, p. 115-123, jan./mar. 2009.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| Registros recuperados : 42 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
26/09/2017 |
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Data da última atualização: |
31/10/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
VALDISSER, P. A. M. R.; PEREIRA, W. J.; ALMEIDA FILHO, J. E.; MÜLLER, B. S. F.; COELHO, G. R. C.; MENEZES, I. P. P. de; VIANNA, J. P. G.; ZUCCHI, M. I.; LANNA, A. C.; COELHO, A. S. G.; OLIVEIRA, J. P. de; MORAES, A. da C.; BRONDANI, C.; VIANELLO, R. P. |
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Afiliação: |
PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; WENDELL J. PEREIRA, UNB; JANEO E. ALMEIDA FILHO, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Rio de Janeiro-; BARBARA S. F. MULLER, UNB; GESIMARIA RIBEIRO COSTA COELHO, CNPAF; IVANDILSON P. P. DE MENEZES, INSTITUTO FEDERAL GOIANO, Urutaí-GO; JOÃO P. G. VIANNA, UNICAMP; MARIA I. ZUCCHI, UNICAMP; ANNA CRISTINA LANNA, CNPAF; ALEXANDRE S. G. COELHO, UFG; JAISON PEREIRA DE OLIVEIRA, CNPAF; ALESSANDRA DA CUNHA MORAES, CNPAF; CLAUDIO BRONDANI, CNPAF; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
BMC Genomics, v. 18, Article 423, 30 mai. 2017. |
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DOI: |
10.1186/s12864-017-3805-4 |
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Idioma: |
Inglês |
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Conteúdo: |
Background: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 18; Mesoamerican: 69) and between the gene pools (59 SNPs), predominantly on chromosomes 1 and 9. The LD extension estimate corrected for population structure and relatedness (r2 SV) was~88 kbp, while for the Andean gene pool was~395 kbp, and for the Mesoamerican was ~ 130 kbp. Conclusions: For common bean, DArTseq provides an efficient and cost-effective strategy of generating SNPs for large-scale genome-wide studies. The DArTseq resulted in an operational panel of 560 polymorphic SNPs in linkage equilibrium, providing high genome coverage. This SNP set could be used in genotyping platforms with many applications, such as population genetics, phylogeny relation between common bean varieties and support to molecular breeding approaches. MenosBackground: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 1... Mostrar Tudo |
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Palavras-Chave: |
Core collection; Diversity analysis; Diversity arrays technology; Loci under selection. |
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Thesagro: |
Feijão; Genética vegetal; Phaseolus vulgaris. |
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Thesaurus NAL: |
Genotyping; Linkage disequilibrium; Single nucleotide polymorphism. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/164318/1/CNPAF-2017-bmc.pdf
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Marc: |
LEADER 03492naa a2200409 a 4500
001 2076278
005 2017-10-31
008 2017 bl uuuu u00u1 u #d
024 7 $a10.1186/s12864-017-3805-4$2DOI
100 1 $aVALDISSER, P. A. M. R.
245 $aIn-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping.$h[electronic resource]
260 $c2017
520 $aBackground: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 18; Mesoamerican: 69) and between the gene pools (59 SNPs), predominantly on chromosomes 1 and 9. The LD extension estimate corrected for population structure and relatedness (r2 SV) was~88 kbp, while for the Andean gene pool was~395 kbp, and for the Mesoamerican was ~ 130 kbp. Conclusions: For common bean, DArTseq provides an efficient and cost-effective strategy of generating SNPs for large-scale genome-wide studies. The DArTseq resulted in an operational panel of 560 polymorphic SNPs in linkage equilibrium, providing high genome coverage. This SNP set could be used in genotyping platforms with many applications, such as population genetics, phylogeny relation between common bean varieties and support to molecular breeding approaches.
650 $aGenotyping
650 $aLinkage disequilibrium
650 $aSingle nucleotide polymorphism
650 $aFeijão
650 $aGenética vegetal
650 $aPhaseolus vulgaris
653 $aCore collection
653 $aDiversity analysis
653 $aDiversity arrays technology
653 $aLoci under selection
700 1 $aPEREIRA, W. J.
700 1 $aALMEIDA FILHO, J. E.
700 1 $aMÜLLER, B. S. F.
700 1 $aCOELHO, G. R. C.
700 1 $aMENEZES, I. P. P. de
700 1 $aVIANNA, J. P. G.
700 1 $aZUCCHI, M. I.
700 1 $aLANNA, A. C.
700 1 $aCOELHO, A. S. G.
700 1 $aOLIVEIRA, J. P. de
700 1 $aMORAES, A. da C.
700 1 $aBRONDANI, C.
700 1 $aVIANELLO, R. P.
773 $tBMC Genomics$gv. 18, Article 423, 30 mai. 2017.
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Embrapa Arroz e Feijão (CNPAF) |
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